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Probeset ID Ag.3L.528.0_CDS_a_at
Current gene ID AGAP011110
Affymetrix transcript data ENSANGT00000012561 /FEA=ENS /TIER=CDS /ANNOT=ENSANGT00000012561 /EVID_CNT=5 /EVID_TYPE=ENS EST /GENE_CLUSTER=AffxAg.528 /SEG=chr3L:+16160457,16164872


STAGE SIGNAL MEAN STD DEV
L 1119.8 62.96
M 786.73 19.72
NBF 932.3 108.62
BF3h 745.77 25.72
BF24h 1326.3 167.21
BF48h 1161 134.54
BF72h 1146.63 8.41
BF96h 1230.53 33.95
BF15d 1637 73.59
TISSUE SIGNAL MEAN STD DEV
Fat bodies 1395.57 192.95
Midgut 922.57 74.57
Ovaries 850.47 26.74


ENSEMBL ANNOTATION
VECTORBASE ANNOTATION
USER-CONTRIBUTED NOTES (0)

AFFYMETRIX ANNOTATION
Probeset ID Ag.3L.528.0_CDS_a_at
Annotation Date 3/8/2007
Target Description ens:ENSANGT00000012561 /FEA=ENS /TIER=CDS /ANNOT=ens:ENSANGT00000012561 /EVID_CNT=5 /EVID_TYPE=ENS EST /GENE_CLUSTER=AffxAg.528 /SEG=chr3L:+16160457,16164872
Genome Version February 2003 (IAGP v.MOZ2)
Alignments chr3L:16160457-16164872 (+) // 100.0 //
Ensembl ENSANGG00000010072
InterPro IPR007798 // Ameloblastin precursor // 1.0E-126 /// IPR007798 // Ameloblastin precursor // 1.0E-126
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a Entrez Gene identifier using 1 transcripts. // false // Matching Probes // A
Annotation Transcript Cluster XM_309535(11)
Transcript Assignments ENSANGESTT00000001168 // --- // ensembl_est // 11 // --- /// SNAP_ANOPHELES00000018272 // cdna:SNAP chromosome:AgamP3:3L:17025705:17028014:1 // ensembl_prediction // 11 // --- /// ENSANGT00000012561 // cdna:novel chromosome:AgamP3:3L:17025705:17028254:1 g

ANOXCEL ANNOTATION
Seq name AGAP011110-PA
First residue M
Description pep:novel chromosome:AgamP3:3L:17025705:17028254:1 gene:AGAP011110 transcript:AGAP011110-RA
CDS name and link to nucleotide data AGAP011110-RA
Description cdna:novel chromosome:AgamP3:3L:17025705:17028254:1 gene:AGAP011110
ATG? ATG
Best match to AG-CDS AGAP011110-RA
E value 0
Score 1283
Extent of match 634
Length of best match 2145
% identity 100
% Match length 30
First residue of match - UTR overhang 1
First residue of sequence 1
Link to whole gene + 2000nt 5' + 200nt 3' AGAP011110-PA
Link to 5' 2,000 nt AGAP011110-PA
Link to 3' 200 nt AGAP011110-PA
Gene name and view at Ensembl AGAP011110
Protein view at Ensembl AGAP011110-PA
Chromosome 3L
For or Rev F
Location join(17025705..17025858,17025928..17027376,17027649..17027824,17027889..17028014)
Exon locations 17025705-17025858 17025928-17027376 17027649-17027824 17027889-17028014
Number of introns and link to fasta file 3
intron lengths 70 273 65
Start 17025705
End 17028014
Gene length 2309
Protein size 634
Complexity index 0.16
Cys number 7
SigP Result CYT
MW 71.039
pI 8.47
TMHMM result ExpAA=0.00 First60=0.00 PredHel=0 Topology=o
Predicted helices 0
Best match to NR protein database transcription factor TFIIH-subun
E value 0.0
Match gi|108870833
Score 969
Extent of match 641
Length of best match 619
% identity 77
% Match length 104
First residue of match 1
First residue of sequence 1
Number of segments 1
Species Aedes aegypti
Key words TRANSCRIPTION FACTOR TFIIH-SUBUNIT AEDES AEGYPTI TFIIH SUBUNIT CG8151-PB ISOFORM B DROSOPHILA MELANOGASTER >GI CG8151-PA CG8151-PC TF2H1_DROME BASAL COMPLEX 1 PSEUDOOBSCURA SIMILAR TO TFB1 APIS MELLIFERA BASIC 62KD GALLUS P62 62 KDA BTF2-P62 GENERAL IIH POLYPEPTIDE RATTUS NORVEGICUS Q9DBA9 TF2H1_MOUSE MUSCULUS BTF2 MONODELPHIS DOMESTICA II H MUS UNNAMED PRODUCT HYPOTHETICAL DANIO RERIO CANIS FAMILIARIS SAPIENS 62KDA SYNTHETIC CONSTRUCT TF2H1_HUMAN COMPONENT SUBUNIT=RNA POLYMERASE INITIATION HOMOLOG HUMAN HELA CELLS 548 AA GTF2H1 CRA_A HOMO 2 3 PAN TROGLODYTES STRONGYLOCENTROTUS PURPURATUS MACACA FASCICULARIS TETRAODON NIGROVIRIDIS XENOPUS LAEVIS GTF2H1-PROV TROPICALIS
Best match to SWISSP database TFIIH basal transcription factor complex subunit 1 - Drosophila melanogaster
E value 0.0
Match Q960E8|TF2H1_DROME
Score 706
Extent of match 642
Length of best match 585
% identity 58
% Match length 110
First residue of match 1
First residue of sequence 1
Number of segments 1
PROSITE motifs ASN_GLYCOSYLATION |CAMP_PHOSPHO_SITE |PKC_PHOSPHO_SITE |CK2_PHOSPHO_SITE |TYR_PHOSPHO_SITE |MYRISTYL |PRENYLATION |MICROBODIES_CTER |TUBULIN_B_AUTOREG |
Non promiscuous prosite motifs TUBULIN_B_AUTOREG |
Best match to GO database Arabidopsis thaliana - cellular_component
E value E-2
Function descriptors molecular_function
Function parent molecular_function
GO # GO:0003674
E value of functional GO 6e-22
Component descriptors cellular_component
Component parent cellular_component
GO # GO:0005575
E value of component GO 6e-22
Process descriptors biological_process
Process parent molecular_function
GO # GO:0008150
E value of process GO 6e-22
Best match to KOG database RNA polymerase II transcription initiation/nucleotide excision repair factor TFI
E value 3E-078
General class Transcription, Replication, recombination and repair
Best match to PFAM database TFIIH_BTF_p62_N
E value 3E-018
Best match to SMART database BSD
E value 7E-013
Best match to AEGY-PEP database transcription factor TFIIH-subun
E value 0
Match AAEL012750-RA
Score 969
Extent of match 641
Length of best match 619
% identity 77
% Match length 104
First residue of match 1
First residue of sequence 1
Number of segments 1
Best match to DMPROT database Tfb1-PC
E value 0.0
Match Tfb1-PC
Score 706
Extent of match 642
Length of best match 585
% identity 58
% Match length 110
First residue of match 1
First residue of sequence 1
Number of segments 1
Best match to CELEG database Confirmed TR:O44499 protein_id:AAB94149.3 Length = 532 Score = 187 bits (47
E value 1E-047
Match R02D3.3
Score 187
Extent of match 330
Length of best match 532
% identity 34
% Match length 62
First residue of match 6
First residue of sequence 7
Number of segments 2
Best match to ARAB database transcription factor-relat
E value 6E-023
Match AT1G55750.1
Score 105
Extent of match 294
Length of best match 591
% identity 29
% Match length 50
First residue of match 50
First residue of sequence 48
Number of segments 2
Best match to YEAST database SW:TFB1_YEAST P32776 saccharomyces cerevisiae (baker's yeast). rna polymerase ii
E value 1E-013
Match NR_SC:SW-TFB1_YEAST
Score 73.6
Extent of match 177
Length of best match 642
% identity 27
% Match length 28
First residue of match 171
First residue of sequence 107
Number of segments 1
Best match to clusterized An. gambiae ESTs from different libraries all-ests-contig_5477
E value 0
Score 1110
Extent of match 550
Length of best match 1922
% identity 99
% Match length 29
First residue of match 31
First residue of sequence 85
Number of segments 1
Orientation of output FOR
Satisfied 95% id on length 100 Y
Number of sequences on assembled contig 10
ESTs coming from from all-instars library 2
Blood-abdomen library 0
Sugar-abd library 0
Infected blood-abd library 0
Big blood fed library 1
Big non blood fed library 0
Head library 0
Immune cells 5
normalized-fatbody 2
Female salivary glands (Ribeiro and Pasteur) 0
Male salivary glands 0
Best match to Affymetrix chip Ag.3L.528.0_CDS_a_at
E value 0
Extent of match 634
% identity 93
Clustered at 35%-Sim- on 60% of length - - Cluster# 2307
# seqs 1
Clustered at 45%-Sim- on 60% of length - - Cluster# 2492
# seqs 1
Clustered at 55%-Sim- on 60% of length - - Cluster# 2559
# seqs 1
Clustered at 65%-Sim- on 60% of length - - Cluster# 2530
# seqs 1
Clustered at 75%-Sim- on 6% of length - - Cluster# 2422
# seqs 1
Clustered at 85%-Sim- on 60% of length - - Cluster# 2299
# seqs 1
Clustered at 95%-Sim- on 60% of length - - Cluster# 2167
# seqs 1



User Contributed Notes
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Ag.3L.528.0_CDS_a_at


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